Characterization of the Nitrate-Nitrite Transporter of the Major Facilitator Superfamily (the nrtP Gene Product) from the Cyanobacterium Nostoc punctiforme Strain ATCC 29133

The products of the NpR1527 and NpR1526 genes of the filamentous, diazotrophic, fresh-water cyanobacterium Nostoc punctiforme strain ATCC 29133 were identified as a nitrate transporter (NRT) and nitrate reductase (NR) respectively, by complementation of nitrate assimilation mutants of the cyanobacterium Synechococcus elongatus strain PCC 7942. While other fresh-water cyanobacteria, including S. elongatus, have an ATP-binding cassette (ABC)-type NRT, the NRT of N. punctiforme belongs to the major facilitator superfamily, being orthologous to the one found in marine cyanobacteria (NrtP). Unlike the ABC-type NRT, which transports both nitrate and nitrite with high affinity, Nostoc NrtP transported nitrate preferentially over nitrite. NrtP was distinct from ABC-type NRT also in its insensitivity to ammonium-promoted regulation at the post-translational level. The nitrate reductase of N. punctiforme was, on the other hand, inhibited upon addition of ammonium to medium, lending ammonium sensitivity to nitrate assimilation.     

A redox trap to augment the intein toolbox

The unregulated activity of inteins during expression and consequent side reactions during work‐up limits their widespread use in biotechnology and chemical biology. Therefore, we exploited a mechanism‐based approach to regulate intein autocatalysis for biotechnological application. The system, inspired by our previous structural studies, is based on reversible trapping of the intein's catalytic cysteine residue through a disulfide bond. Using standard mutagenesis, the disulfide trap can be implemented to impart redox control over different inteins and for a variety of applications both in vitro and in Escherichia coli. Thereby, we first enhanced the output for bioconjugation in intein‐mediated protein ligation, also referred to as expressed protein ligation, where precursor recovery and product yield were augmented fourfold to sixfold. Second, in bioseparation experiments, the redox trap boosted precursor recovery and product yield twofold. Finally, the disulfide‐trap intein technology stimulated development of a novel bacterial redox sensor. This sensor reliably identified hyperoxic E. coli harboring mutations that disrupt the reductive pathways for thioredoxin and glutathione, against a background of wild‐type cells. Biotechnol. Bioeng. 2013; 110: 1565–1573. © 2012 Wiley Periodicals, Inc.     

Population studies of the beech leaf mining weevil (Rhynchaenus fagi) in Ireland and Scotland

Abstract. 1. Population budgets for Rhynchaenus fagi, based for the most part on samples of beech leaves taken in June, were constructed for a 10-year period (Northern Ireland) and a 3-year period (Scottish borders).
2. There were years of sustained population growth and sustained decline, but not enough evidence to suggest a cycle. Similar population levels were found at both sites in all but one year.
3. Key factors were associated with the adult stage, although egg mortality may also make a significant contribution to population change.
4. Unknown sources of mortality embodied in the residual mortality were also suspected of acting in a density dependent manner, compensating for variation in parasitism.
5. Death rate of larvae within mines was related to May temperature in Northern Ireland, but not so clearly in Scotland.     

Fatness and fitness: exposing the logic of evolutionary explanations for obesity

To explore the logic of evolutionary explanations of obesity we modelled food consumption in an animal that minimizes mortality (starvation plus predation) by switching between activities that differ in energy gain and predation. We show that if switching does not incur extra predation risk, the animal should have a single threshold level of reserves above which it performs the safe activity and below which it performs the dangerous activity. The value of the threshold is determined by the environmental conditions, implying that animals should have variable ‘set points’. Selection pressure to prevent energy stores exceeding the optimal level is usually weak, suggesting that immediate rewards might easily overcome the controls against becoming overweight. The risk of starvation can have a strong influence on the strategy even when starvation is extremely uncommon, so the incidence of mortality during famine in human history may be unimportant for explanations for obesity. If there is an extra risk of switching between activities, the animal should have two distinct thresholds: one to initiate weight gain and one to initiate weight loss. Contrary to the dual intervention point model, these thresholds will be inter-dependent, such that altering the predation risk alters the location of both thresholds; a result that undermines the evolutionary basis of the drifty genes hypothesis. Our work implies that understanding the causes of obesity can benefit from a better understanding of how evolution shapes the mechanisms that control body weight.     

Organization and expression of mouse Hox3 cluster genes

Summary The three yolk protein genes (yp) of Drosophila melanogaster are transcribed in a sex- and tissue-limited fashion. We have searched for cis-regulatory sequences in regions flanking yp1 and yp2 to identify the elements that confer female-specific expression in the fat body. One such 127 by element has previously been identified in this region. We show here the existence of two additional regions which confer female fat body-specific expression on an Adh reporter gene and on the native yp2 gene, respectively. This suggests some redundancy in the regulation of expression of the yp genes. Computer searches for putative binding sites for the DSX protein, which regulates sex-specific expression of the yp genes, revealed several such sites in our constructs. However, the significance of these is unclear since many such sites also occur in genes which one would not expect to be regulated in a sex-specific manner (e.g. Adh, Actin 5C). We suggest that DSX acts in concert with other proteins to mediate sex- and tissue-specific expression of the yp genes.     

造林气候调节效应及其影响机理研究进展

造林及人工林生长吸收并固定二氧化碳（CO₂），其"幼龄效应"使得全球中、高纬度新造林的CO₂吸收超过天然林，被认为是减缓全球变暖、控制升温2℃目标的一个关键战略，亦是生态保护修复和林业可持续发展并举的一个重要措施。我国人工林保有面积居全球首位，占林地面积的36%，近几十年造林为全球变绿的贡献超过10%。造林改变地表生物地球化学和生物物理过程从而影响温度、降水、成云、风等，在不同气候带、不同区域呈现差异性气候调节效应，取决于温室气体、辐射能量、水汽收支之间的平衡结果。分析了国际、国内在应对气候变化活动中对于造林的急迫需求，综述了造林气候调节效应的研究进展，以及产生这种效应的生物地球化学和生物物理机理，总结了当前研究中亟待深入探索的内容，并展望了未来造林仍需深入开展系统地生物地球化学和生物物理机理研究，推动可持续地人工林管理、恢复具有完整结构的森林、促进多重生态系统服务的协同。     

Neuronal non-CG methylation is an essential target for MeCP2 function

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Kr-h1 maintains distinct caste-specific neurotranscriptomes in response to socially regulated hormones

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